From a79c2f04682c44275d2415d39e6996802c4a83c4 Mon Sep 17 00:00:00 2001
From: Jaron Kent-Dobias <jkentdobias@g.hmc.edu>
Date: Thu, 1 May 2014 16:01:48 -0700
Subject: created a git repository for my thesis code.

---
 src/hessget.cpp | 107 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 107 insertions(+)
 create mode 100644 src/hessget.cpp

(limited to 'src/hessget.cpp')

diff --git a/src/hessget.cpp b/src/hessget.cpp
new file mode 100644
index 0000000..ad4ae2d
--- /dev/null
+++ b/src/hessget.cpp
@@ -0,0 +1,107 @@
+/* eigenget.cpp
+ *
+ * Copyright (C) 2013 Jaron Kent-Dobias
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+// A utility which returns a given generalized eigenvector to the user.
+
+#include "domain_energy.h"
+#include "domain_eigen.h"
+
+#include <unistd.h>
+#include <stdio.h>
+#include <iostream>
+#include <stdlib.h>
+#include <math.h>
+#include <string>
+
+// GSL includes.
+#include <gsl/gsl_sf.h>
+#include <gsl/gsl_math.h>
+#include <gsl/gsl_complex.h>
+#include <gsl/gsl_complex_math.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_permutation.h>
+#include <gsl/gsl_permute_vector.h>
+#include <gsl/gsl_blas.h>
+#include <gsl/gsl_linalg.h>
+#include <gsl/gsl_sort_vector.h>
+
+
+// Initializes the program.
+int main(int argc, char *argv[]) {
+
+	int opt;
+	unsigned n, m, nn;
+	double c;
+	char *in_filename, *out_filename;
+	bool truehessian;
+
+	gsl_vector *z;
+	gsl_matrix *hess, *testhess;
+
+	truehessian = false;
+
+	while ((opt = getopt(argc, argv, "n:m:c:i:o:t")) != -1) {
+		switch (opt) {
+			case 'n':
+				n = atoi(optarg);
+				break;
+			case 'm':
+				m = atoi(optarg);
+				break;
+			case 'c':
+				c = atof(optarg);
+				break;
+			case 'i':
+				in_filename = optarg;
+				break;
+			case 'o':
+				out_filename = optarg;
+				break;
+			case 't':
+				truehessian = true;
+				break;
+			default:
+				exit(EXIT_FAILURE);
+		}
+	}
+
+	if (truehessian) nn = 3 * n + 4;
+	else nn = 3 * n + 3;
+
+	z = gsl_vector_alloc(3 * n + 3);
+	hess = gsl_matrix_alloc(nn, nn);
+	testhess = gsl_matrix_alloc(nn, nn);
+
+	FILE *in_file = fopen(in_filename, "r");
+	gsl_vector_fscanf(in_file, z);
+	fclose(in_file);
+
+	domain_energy_fixedHessian(hess, n, z, c);
+	domain_energy_fixedHessian(testhess, n, z, c);
+
+	FILE *out_file = fopen(out_filename, "w");
+	for (unsigned i = 0; i < nn; i++) {
+		for (unsigned j = 0; j < nn; j++) {
+			fprintf(out_file, "%e\t", gsl_matrix_get(hess, i, j) - gsl_matrix_get(testhess, i, j));
+		}
+		fprintf(out_file, "\n");
+	}
+	fclose(out_file);
+}
+
+
-- 
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