From 2de471524c9e281e1b83049183d5a4deecd8b7b3 Mon Sep 17 00:00:00 2001
From: Jaron Kent-Dobias <jaron@kent-dobias.com>
Date: Wed, 2 Oct 2019 10:52:05 -0400
Subject: Updated percolation and sample, percolation measurements presently
 gutted

---
 src/perc_meas.cpp       | 62 -------------------------------------------------
 src/perc_meas.hpp       | 13 -----------
 src/percolation.cpp     |  4 ++--
 src/sample_fracture.cpp |  2 +-
 4 files changed, 3 insertions(+), 78 deletions(-)

diff --git a/src/perc_meas.cpp b/src/perc_meas.cpp
index f0d7cbb..4029204 100644
--- a/src/perc_meas.cpp
+++ b/src/perc_meas.cpp
@@ -71,10 +71,6 @@ void update_distribution_file(std::string id, const std::vector<std::vector<uint
 }
 
 pm::pm(unsigned n, double a) :
-  G(2 * n),
-  rank(2 * n),
-  parent(2 * n),
-  ds(&rank[0], &parent[0]),
   sn(3 * n),
   sN(3 * n),
   ss(2 * n),
@@ -96,10 +92,6 @@ pm::pm(unsigned n, double a) :
 }
 
 pm::pm(unsigned Lx, unsigned Ly) :
-  G(Lx * Ly / 2),
-  rank(Lx * Ly / 2),
-  parent(Lx * Ly / 2),
-  ds(&rank[0], &parent[0]),
   sn(Lx * Ly),
   sN(Lx * Ly),
   ss(Lx * Ly / 2),
@@ -131,32 +123,11 @@ pm::~pm() {
 }
 
 void pm::pre_fracture(const network&) {
-  boost::remove_edge_if(trivial, G);
-  initialize_incremental_components(G, ds);
-  incremental_components(G, ds);
   r = 0;
   sN_tmp.clear();
 }
 
 void pm::bond_broken(const network& net, const current_info& cur, unsigned i) {
-  boost::add_edge(net.G.dual_edges[i].v[0], net.G.dual_edges[i].v[1], {i}, G);
-  ds.union_set(net.G.dual_edges[i].v[0], net.G.dual_edges[i].v[1]);
-
-  boost::component_index<VertexIndex> components(parent.begin(), parent.end());
-  std::vector<unsigned> counts(components.size());
-
-  sN_tmp.push_front({});
-
-  BOOST_FOREACH(VertexIndex current_index, components) {
-    unsigned comp_size = 0;
-    BOOST_FOREACH(VertexIndex child_index, components[current_index]) {
-      comp_size++;
-    }
-
-    sn[r][comp_size - 1]++;
-    sN_tmp.front().push_back(comp_size - 1);
-  }
-
   std::vector<bool> vertex_in(net.G.vertices.size());
 
   for (unsigned i = 0; i < net.G.edges.size(); i++) {
@@ -179,39 +150,6 @@ void pm::bond_broken(const network& net, const current_info& cur, unsigned i) {
 }
 
 void pm::post_fracture(network &n) {
-  auto post_cracks = find_minimal_crack(G, n);
-  std::vector<unsigned> component(boost::num_vertices(G));
-  unsigned num = boost::connected_components(G, &component[0]);
-  if (post_cracks.size() > 2 || post_cracks.size() == 0) {
-    throw badcycleex;
-  }
-  for (auto c : post_cracks) {
-    sl[c.second.size() - 1]++;
-  }
-  unsigned crack_component = component[n.G.dual_edges[post_cracks.front().second.front()].v[0]];
-
-  std::vector<std::list<graph::coordinate>> components(num);
-
-  for (unsigned i = 0; i < n.G.dual_vertices.size(); i++) {
-    components[component[i]].push_back(n.G.dual_vertices[i].r);
-  }
-
-  for (unsigned i = 0; i < num; i++) {
-    if (i != crack_component) {
-      sm[components[i].size() - 1]++;
-    } else {
-      ss[components[i].size() - 1]++;
-    }
-  }
-
-  unsigned dr = 0;
-  for (std::list<unsigned> l : sN_tmp) {
-    for (unsigned size : l) {
-      sN[dr][size]++;
-    }
-    dr++;
-  }
-
   sd[r - 1]++;
 }
 
diff --git a/src/perc_meas.hpp b/src/perc_meas.hpp
index 75ef61a..b19b4a4 100644
--- a/src/perc_meas.hpp
+++ b/src/perc_meas.hpp
@@ -8,27 +8,14 @@
 #include <iostream>
 #include <array>
 
-#include <fftw3.h>
-
-#include <hooks.hpp>
-#include <boost/graph/graph_utility.hpp>
-#include <boost/graph/incremental_components.hpp>
-#include <boost/pending/disjoint_sets.hpp>
-#include <boost/foreach.hpp>
 
 #include "analysis_tools.hpp"
-typedef boost::graph_traits<Graph>::vertex_descriptor Vertex;
-typedef boost::graph_traits<Graph>::vertices_size_type VertexIndex;
 
 
 class pm : public hooks {
   private:
     unsigned r;
     current_info last_cur;
-    Graph G;
-    std::vector<VertexIndex> rank;
-    std::vector<Vertex> parent;
-    boost::disjoint_sets<VertexIndex*, Vertex*> ds;
 
     // measurement storage
     std::vector<std::vector<uint64_t>> sn; // non-spanning cluster size distribution
diff --git a/src/percolation.cpp b/src/percolation.cpp
index b9f278e..0b1d0ad 100644
--- a/src/percolation.cpp
+++ b/src/percolation.cpp
@@ -81,7 +81,7 @@ int main(int argc, char* argv[]) {
           graph G(n, a, rng);
           percolation_network fuse_network(G, &c);
           fuse_network.set_thresholds(beta, rng);
-          fuse_network.fracture(meas, true);
+          fuse_network.fracture(meas);
           break;
         } catch (std::exception &e) {
           std::cout << e.what() << '\n';
@@ -99,7 +99,7 @@ int main(int argc, char* argv[]) {
           graph G(Lx, Ly);
           percolation_network fuse_network(G, &c);
           fuse_network.set_thresholds(beta, rng);
-          fuse_network.fracture(meas, true);
+          fuse_network.fracture(meas);
           break;
         } catch (std::exception &e) {
           std::cout << e.what() << '\n';
diff --git a/src/sample_fracture.cpp b/src/sample_fracture.cpp
index 417e7ec..eaba69e 100644
--- a/src/sample_fracture.cpp
+++ b/src/sample_fracture.cpp
@@ -56,7 +56,7 @@ int main(int argc, char* argv[]) {
     graph G(Lx, 1.0, rng);
     elastic_network network(G, &c);
     network.set_thresholds(beta, rng);
-    network.fracture(meas, true);
+    network.fracture(meas);
 
     /*graph G2 = G.rotate();
     class network network2(G2, &c);
-- 
cgit v1.2.3-54-g00ecf