From 2e980a974e2f825afbe56ec634a764200892a23c Mon Sep 17 00:00:00 2001
From: Jaron Kent-Dobias <jaron@kent-dobias.com>
Date: Wed, 14 Nov 2018 21:16:06 -0500
Subject: cluster size distribution is now measured at fracture minus spanning
 cluster

---
 src/measurements.cpp | 51 ++++++++++++++++++++++++++-------------------------
 1 file changed, 26 insertions(+), 25 deletions(-)

diff --git a/src/measurements.cpp b/src/measurements.cpp
index cc4188a..57f85f5 100644
--- a/src/measurements.cpp
+++ b/src/measurements.cpp
@@ -291,7 +291,7 @@ void ma::bond_broken(const network& net, const current_info& cur, unsigned int i
     sa[avalanches.back().size() - 1]++;
     Na++;
 
-    memset(fftw_forward_in, 0.0, net.G.edges.size());
+    std::fill_n(fftw_forward_in, net.G.edges.size(), 0.0);
 
     for (auto e : avalanches.back()) {
       fftw_forward_in[e] = 1.0;
@@ -316,6 +316,29 @@ void ma::post_fracture(network &n) {
 
   unsigned int crack_component = component[n.G.dual_edges[crack.front()][0]];
 
+  // non-spanning clusters
+  for (unsigned int i = 0; i < num; i++) {
+    if (i != crack_component) {
+      unsigned int size = 0;
+
+      for (unsigned int j = 0; j < n.G.edges.size(); j++) {
+        if (component[n.G.dual_edges[j][0]] == i && n.fuses[j]) {
+          size++;
+          fftw_forward_in[j] = 1.0;
+        } else{
+          fftw_forward_in[j] = 0.0;
+        }
+      }
+
+      if (size > 0) {
+        sc[size - 1]++;
+        autocorrelation(L, Ccc, forward_plan, fftw_forward_in, fftw_forward_out, reverse_plan, fftw_reverse_in, fftw_reverse_out);
+        Nc++;
+      }
+    }
+  }
+
+  // bin counting
   for (unsigned int be = 0; be < log2(L); be++) {
     unsigned int bin = pow(2, be);
 
@@ -348,7 +371,7 @@ void ma::post_fracture(network &n) {
   autocorrelation(L, Cmm, forward_plan, fftw_forward_in, fftw_forward_out, reverse_plan, fftw_reverse_in, fftw_reverse_out);
 
   // crack surface correlations
-  memset(fftw_forward_in, 0.0, n.G.edges.size());
+  std::fill_n(fftw_forward_in, n.G.edges.size(), 0.0);
 
   for (auto edge : crack) {
     fftw_forward_in[edge] = 1.0;
@@ -370,7 +393,7 @@ void ma::post_fracture(network &n) {
 
   autocorrelation(L, Cee, forward_plan, fftw_forward_in, fftw_forward_out, reverse_plan, fftw_reverse_in, fftw_reverse_out);
 
-  memset(fftw_forward_in, 0.0, n.G.edges.size());
+  std::fill_n(fftw_forward_in, n.G.edges.size(), 0.0);
 
   // rewind the last avalanche
   for (auto e : avalanches.back()) {
@@ -381,28 +404,6 @@ void ma::post_fracture(network &n) {
 
   autocorrelation(L, Cll, forward_plan, fftw_forward_in, fftw_forward_out, reverse_plan, fftw_reverse_in, fftw_reverse_out);
 
-  // cluster size distribution and cluster-cluster correlation
-  num = boost::connected_components(G, &component[0]);
-
-  for (unsigned int i = 0; i < num; i++) {
-    unsigned int size = 0;
-
-    for (unsigned int j = 0; j < n.G.edges.size(); j++) {
-      if (component[n.G.dual_edges[j][0]] == i && n.fuses[j]) {
-        size++;
-        fftw_forward_in[j] = 1.0;
-      } else{
-        fftw_forward_in[j] = 0.0;
-      }
-    }
-
-    if (size > 0) {
-      sc[size - 1]++;
-      autocorrelation(L, Ccc, forward_plan, fftw_forward_in, fftw_forward_out, reverse_plan, fftw_reverse_in, fftw_reverse_out);
-      Nc++;
-    }
-  }
-
   // damage size distribution
   unsigned int total_broken = 0;
 
-- 
cgit v1.2.3-70-g09d2