1 files changed, 30 insertions, 29 deletions

diff --git a/src/fracture.h b/src/fracture.h
index f0a22e8..0b078ff 100644
--- a/src/fracture.h
+++ b/src/fracture.h
@@ -76,42 +76,42 @@ typedef struct {
 	double inf;
 	cholmod_dense *boundary_cond;
 	cholmod_factor *factor;
-	unsigned int *marks;
-	unsigned int *dual_marks;
+	uint_t *marks;
+	uint_t *dual_marks;
 	bool voltage_bound;
-	unsigned int num_components;
+	uint_t num_components;
 	cholmod_sparse *adjacency;
 	cholmod_sparse *dual_adjacency;
 	bool debug_stop;
 } net_t;
 
 typedef struct {
-	unsigned int num_broken;
-	unsigned int *break_list;
+	uint_t num_broken;
+	uint_t *break_list;
 	double *conductivity;
 	double *extern_field;
 } data_t;
 
-intptr_t *run_voronoi(unsigned int num_coords, double *coords, bool periodic, double xmin, double xmax, double ymin, double ymax);
+intptr_t *run_voronoi(uint_t num_coords, double *coords, bool periodic, double xmin, double xmax, double ymin, double ymax);
 
-int update_components(const cholmod_sparse *laplacian, unsigned int *marks,
+int update_components(const cholmod_sparse *laplacian, uint_t *marks,
 											int old_num_components, int v1, int v2, int exclude);
 
-unsigned int *find_components(const cholmod_sparse *laplacian, unsigned int skip);
+uint_t *find_components(const cholmod_sparse *laplacian, uint_t skip);
 
 cholmod_sparse *gen_adjacency(const net_t *instance, bool dual, bool breakv,
-															unsigned int pad, cholmod_common *c);
+															uint_t pad, cholmod_common *c);
 
 cholmod_sparse *gen_laplacian(const net_t *instance, cholmod_common *c,
 															bool symmetric);
 
-int edge_to_verts(unsigned int width, bool periodic, unsigned int edge,
+int edge_to_verts(uint_t width, bool periodic, uint_t edge,
 									bool index);
 
-int dual_edge_to_verts(unsigned int width, bool periodic, unsigned int edge,
+int dual_edge_to_verts(uint_t width, bool periodic, uint_t edge,
 											 bool index);
 
-double dual_vert_to_coord(unsigned int width, bool periodic, unsigned int vert,
+double dual_vert_to_coord(uint_t width, bool periodic, uint_t vert,
 													bool index);
 
 void factor_update(cholmod_factor *factor, uint_t v1, uint_t v2, cholmod_common *c);
@@ -124,19 +124,19 @@ double net_conductivity(const net_t *net, const double *voltages);
 
 void update_boundary(net_t *instance, const double *avg_field);
 
-FILE *get_file(const char *prefix, unsigned int width, unsigned int crack,
-							 double beta, unsigned int iter, unsigned int num_iter,
-							 unsigned int num, bool read);
+FILE *get_file(const char *prefix, uint_t width, uint_t crack,
+							 double beta, uint_t iter, uint_t num_iter,
+							 uint_t num, bool read);
 
-double update_beta(double beta, unsigned int width, const double *stress,
+double update_beta(double beta, uint_t width, const double *stress,
 									 const double *damage, double bound_total);
 
-cholmod_sparse *gen_voltcurmat(unsigned int num_edges, unsigned int num_verts,
-															 unsigned int *edges_to_verts, cholmod_common *c);
+cholmod_sparse *gen_voltcurmat(uint_t num_edges, uint_t num_verts,
+															 uint_t *edges_to_verts, cholmod_common *c);
 
 net_t *net_copy(const net_t *net, cholmod_common *c);
 
-graph_t *ini_square_network(unsigned int width, bound_t boundary, bool side_bounds,
+graph_t *ini_square_network(uint_t width, bound_t boundary, bool side_bounds,
 												 cholmod_common *c);
 
 void graph_free(graph_t *network, cholmod_common *c);
@@ -144,29 +144,30 @@ void net_free(net_t *instance, cholmod_common *c);
 
 net_t *net_create(const graph_t *g, double inf, double beta, double notch_len, bool vb, cholmod_common *c);
 
-graph_t *ini_voro_graph(unsigned int L, bound_t boundary, bool use_dual,
-													double *(*genfunc)(unsigned int, bound_t, gsl_rng *, unsigned int *),
+graph_t *ini_voro_graph(uint_t L, bound_t boundary, bool use_dual,
+													double *(*genfunc)(uint_t, bound_t, gsl_rng *, uint_t *),
 													cholmod_common *c);
 
-bool break_edge(net_t *instance, unsigned int edge, cholmod_common *c);
+bool break_edge(net_t *instance, uint_t edge, cholmod_common *c);
 
 void finish_instance(net_t *instance, cholmod_common *c);
 
 net_t *coursegrain_square(net_t *instance, graph_t *network_p, cholmod_common *c);
 
-unsigned int *get_clusters(net_t *instance, cholmod_common *c);
+uint_t *get_clusters(net_t *instance, cholmod_common *c);
 
-unsigned int *get_cluster_dist(net_t *instance, cholmod_common *c);
+uint_t *get_cluster_dist(net_t *instance, cholmod_common *c);
 
-double *genfunc_uniform(unsigned int L, bound_t boundary, gsl_rng *r, unsigned int *num);
-double *genfunc_hyperuniform(unsigned int L, bound_t boundary, gsl_rng *r, unsigned int *num);
+double *genfunc_uniform(uint_t L, bound_t boundary, gsl_rng *r, uint_t *num);
+double *genfunc_hyperuniform(uint_t L, bound_t boundary, gsl_rng *r, uint_t *num);
 void randfunc_flat(gsl_rng *r, double *x, double *y);
 void randfunc_gaus(gsl_rng *r, double *x, double *y);
 
-unsigned int **get_dists(const graph_t *network);
-double *get_corr(net_t *instance, unsigned int **dists, cholmod_common *c);
+uint_t **get_dists(const graph_t *network);
+uint_t *dijkstra(const graph_t *g, uint_t source);
+double *get_corr(net_t *instance, uint_t **dists, cholmod_common *c);
 
-double *bin_values(graph_t *network, unsigned int width, double *values);
+double *bin_values(graph_t *network, uint_t width, double *values);
 
 cholmod_dense *bound_set(const graph_t *g, bool vb, double notch_len, cholmod_common *c);