big library overhual, fixed all examples, added documentation with sphinx

1 files changed, 0 insertions, 133 deletions

diff --git a/examples/animate_ising.cpp b/examples/animate_ising.cpp
deleted file mode 100644
index e33736e..0000000
--- a/examples/animate_ising.cpp
+++ /dev/null
@@ -1,133 +0,0 @@
-
-#include <getopt.h>
-#include <iostream>
-#include <chrono>
-
-#include <GL/glut.h>
-
-#include <wolff/models/ising.hpp>
-#include <wolff/finite_states.hpp>
-#include <wolff.hpp>
-
-class draw_ising : public wolff_measurement<ising_t, ising_t> {
-  private:
-    unsigned int frame_skip;
-    v_t C;
-  public:
-    draw_ising(const wolff_system<ising_t, ising_t>& S, unsigned int window_size, unsigned int frame_skip, int argc, char *argv[]) : frame_skip(frame_skip){
-      glutInit(&argc, argv);
-      glutInitDisplayMode(GLUT_SINGLE | GLUT_RGB);
-      glutInitWindowSize(window_size, window_size);
-      glutCreateWindow("wolff");
-      glClearColor(0.0,0.0,0.0,0.0);
-      glMatrixMode(GL_PROJECTION);
-      glLoadIdentity();
-      gluOrtho2D(0.0, S.L, 0.0, S.L);
-    }
-
-    void pre_cluster(N_t, N_t, const wolff_system<ising_t, ising_t>& S, v_t, const ising_t&) {
-      glClear(GL_COLOR_BUFFER_BIT);
-      for (v_t i = 0; i < pow(S.L, 2); i++) {
-        if (S.s[i].x == S.s0.x) {
-          glColor3f(0.0, 0.0, 0.0);
-        } else {
-          glColor3f(1.0, 1.0, 1.0);
-        }
-        glRecti(i / S.L, i % S.L, (i / S.L) + 1, (i % S.L) + 1);
-      }
-      glFlush();
-      C = 0;
-    }
-
-    void plain_bond_visited(const wolff_system<ising_t, ising_t>&, v_t, const ising_t&, v_t, double dE) {}
-
-    void ghost_bond_visited(const wolff_system<ising_t, ising_t>&, v_t, const ising_t& s_old, const ising_t& s_new, double dE) {}
-
-    void plain_site_transformed(const wolff_system<ising_t, ising_t>& S, v_t i, const ising_t&) {
-      glColor3f(1.0, 0.0, 0.0);
-      glRecti(i / S.L, i % S.L, (i / S.L) + 1, (i % S.L) + 1);
-      C++;
-      if (C % frame_skip == 0) {
-        glFlush();
-      }
-    }
-
-    void ghost_site_transformed(const wolff_system<ising_t, ising_t>&, const ising_t&) {}
-
-    void post_cluster(N_t, N_t, const wolff_system<ising_t, ising_t>&) {}
-};
-
-int main(int argc, char *argv[]) {
-
-  // set defaults
-  N_t N = (N_t)1e4;
-  D_t D = 2;
-  L_t L = 128;
-  double T = 2.26918531421;
-  double H = 0.0;
-  unsigned int window_size = 512;
-  unsigned int frame_skip = 1;
-
-  int opt;
-
-  // take command line arguments
-  while ((opt = getopt(argc, argv, "N:D:L:T:H:w:f:")) != -1) {
-    switch (opt) {
-    case 'N': // number of steps
-      N = (N_t)atof(optarg);
-      break;
-    case 'D': // dimension
-      D = atoi(optarg);
-      break;
-    case 'L': // linear size
-      L = atoi(optarg);
-      break;
-    case 'T': // temperature
-      T = atof(optarg);
-      break;
-    case 'H': // external field
-      H = atof(optarg);
-      break;
-    case 'w':
-      window_size = atoi(optarg);
-      break;
-    case 'f':
-      frame_skip = atoi(optarg);
-      break;
-    default:
-      exit(EXIT_FAILURE);
-    }
-  }
-
-  // define the spin-spin coupling
-  std::function <double(const ising_t&, const ising_t&)> Z = [] (const ising_t& s1, const ising_t& s2) -> double {
-    return (double)(s1 * s2);
-  };
-
-  // define the spin-field coupling
-  std::function <double(const ising_t&)> B = [=] (const ising_t& s) -> double {
-    return H * s;
-  };
-
-  // initialize the system
-  wolff_system<ising_t, ising_t> S(D, L, T, Z, B);
-
-  // define function that generates self-inverse rotations
-  std::function <ising_t(std::mt19937&, const ising_t&)> gen_R = [] (std::mt19937&, const ising_t& s) -> ising_t {
-    return ising_t(true);
-  };
-
-  // initailze the measurement object
-  draw_ising A(S, window_size, frame_skip, argc, argv);
-
-  // initialize the random number generator
-  auto seed = std::chrono::high_resolution_clock::now().time_since_epoch().count();
-  std::mt19937 rng{seed};
-
-  // run wolff N times
-  wolff<ising_t, ising_t>(N, S, gen_R, A, rng);
-
-  // exit
-  return 0;
-}
-