all the R_t have been objectified

1 files changed, 84 insertions, 114 deletions

diff --git a/lib/orthogonal.h b/lib/orthogonal.h
index c0958f2..34cd44e 100644
--- a/lib/orthogonal.h
+++ b/lib/orthogonal.h
@@ -11,164 +11,134 @@
 #include "vector.h"
 
 template <q_t q, class T>
-struct orthogonal_t { bool is_reflection; T *x; };
+class orthogonal_t : public std::array<std::array<T, q>, q> {
+  public :
+  bool is_reflection;
 
-template <q_t q, class T>
-void init(orthogonal_t <q, T> *ptr) {
-  ptr->is_reflection = false;
-  ptr->x = (T *)calloc(q * q, sizeof(T));
-
-  for (q_t i = 0; i < q; i++) {
-    ptr->x[q * i + i] = (T)1;
-  }
-}
-
-template <q_t q, class T>
-orthogonal_t <q, T> copy (orthogonal_t <q, T> m) {
-  orthogonal_t <q, T> m_copy;
-  m_copy.is_reflection = m.is_reflection;
-
-  q_t size;
-
-  if (m.is_reflection) {
-    size = q;
-  } else {
-    size = q * q;
-  }
-
-  m_copy.x = (T *)calloc(size, sizeof(T));
-
-  for (q_t i = 0; i < size; i++) {
-    m_copy.x[i] = m.x[i];
+  orthogonal_t() : is_reflection(false) {
+    for (q_t i = 0; i < q; i++) {
+      (*this)[i].fill(0);
+      (*this)[i][i] = (T)1;
+    }
   }
 
-  return m_copy;
-}
-
-template <q_t q, class T>
-void free_spin (orthogonal_t <q, T> m) {
-  free(m.x);
-}
-
-template <q_t q, class T>
-vector_t <q, T> act (orthogonal_t <q, T> m, vector_t <q, T> v) {
-  vector_t <q, T> v_rot;
+  vector_t<q, T> act(const vector_t <q, T>& v) const {
+    vector_t <q, T> v_rot;
 
-  if (m.is_reflection) {
-    double prod = 0;
-    for (q_t i = 0; i < q; i++) {
-      prod += v[i] * m.x[i];
-    }
-    for (q_t i = 0; i < q; i++) {
-      v_rot[i] = v[i] - 2 * prod * m.x[i];
-    }
-  } else {
-    for (q_t i = 0; i < q; i++) {
-      for (q_t j = 0; j < q; j++) {
-        v_rot[i] += m.x[q * i + j] * v[j];
+    if (is_reflection) {
+      double prod = 0;
+      for (q_t i = 0; i < q; i++) {
+        prod += v[i] * (*this)[0][i];
+      }
+      for (q_t i = 0; i < q; i++) {
+        v_rot[i] = v[i] - 2 * prod * (*this)[0][i];
+      }
+    } else {
+      for (q_t i = 0; i < q; i++) {
+        for (q_t j = 0; j < q; j++) {
+          v_rot[i] += (*this)[i][j] * v[j];
+        }
       }
     }
-  }
 
-  return v_rot;
-}
+    return v_rot;
+  }
 
-template <q_t q, class T>
-orthogonal_t <q, T> act (orthogonal_t <q, T> m1, orthogonal_t <q, T> m2) {
-  orthogonal_t <q, T> m2_rot;
+  orthogonal_t<q, T> act(const orthogonal_t <q, T>& m) const {
+    orthogonal_t <q, T> m_rot;
 
-  m2_rot.is_reflection = false;
-  m2_rot.x = (T *)calloc(q * q, sizeof(T));
+    m_rot.is_reflection = false;
 
-  if (m1.is_reflection) {
-    for (q_t i = 0; i < q; i++) {
-      double akOki = 0;
+    if (is_reflection) {
+      for (q_t i = 0; i < q; i++) {
+        double akOki = 0;
 
-      for (q_t k = 0; k < q; k++) {
-        akOki += m1.x[k] * m2.x[q * k + i];
-      }
+        for (q_t k = 0; k < q; k++) {
+          akOki += (*this)[0][k] * m[k][i];
+        }
 
-      for (q_t j = 0; j < q; j++) {
-        m2_rot.x[q * j + i] = m2.x[q * j + i] - 2 * akOki * m1.x[j];
+        for (q_t j = 0; j < q; j++) {
+          m_rot[j][i] = m[j][i] - 2 * akOki * (*this)[0][j];
+        }
       }
-    }
-  } else {
-    for (q_t i = 0; i < q; i++) {
-      for (q_t j = 0; j < q; j++) {
-        for (q_t k = 0; k < q; k++) {
-          m2_rot.x[i * q + j] += m1.x[i * q + j] * m2.x[j * q + k];
+    } else {
+      for (q_t i = 0; i < q; i++) {
+        m_rot[i].fill(0);
+        for (q_t j = 0; j < q; j++) {
+          for (q_t k = 0; k < q; k++) {
+            m_rot[i][j] += (*this)[i][j] * m[j][k];
+          }
         }
       }
     }
+
+    return m_rot;
   }
 
-  return m2_rot;
-}
+  vector_t <q, T> act_inverse(const vector_t <q, T>& v) const {
+    if (is_reflection) {
+      return this->act(v); // reflections are their own inverse
+    } else {
+      vector_t <q, T> v_rot;
 
-template <q_t q, class T>
-vector_t <q, T> act_inverse (orthogonal_t <q, T> m, vector_t <q, T> v) {
-  if (m.is_reflection) {
-    return act(m, v); // reflections are their own inverse
-  } else {
-    vector_t <q, T> v_rot;
-
-    for (q_t i = 0; i < q; i++) {
-      for (q_t j = 0; j < q; j++) {
-        v_rot[i] += m.x[q * j + i] * v[j];
+      for (q_t i = 0; i < q; i++) {
+        for (q_t j = 0; j < q; j++) {
+          v_rot[i] += (*this)[j][i] * v[j];
+        }
       }
-    }
 
-    return v_rot;
+      return v_rot;
+    }
   }
-}
 
-template <q_t q, class T>
-orthogonal_t <q, T> act_inverse (orthogonal_t <q, T> m1, orthogonal_t <q, T> m2) {
-  if (m1.is_reflection) {
-    return act(m1, m2); // reflections are their own inverse
-  } else {
-    orthogonal_t <q, T> m2_rot;
-    m2_rot.x = (T *)calloc(q * q, sizeof(T));
+  vector_t <q, T> act_inverse(const orthogonal_t <q, T>& m) const {
+    if (is_reflection) {
+      return this->act(m); // reflections are their own inverse
+    } else {
+      orthogonal_t <q, T> m_rot;
+      m_rot.is_reflection = false;
 
-    for (q_t i = 0; i < q; i++) {
-      for (q_t j = 0; j < q; j++) {
-        for (q_t k = 0; k < q; k++) {
-          m2_rot.x[i * q + j] += m1.x[j * q + i] * m2.x[j * q + k];
+      for (q_t i = 0; i < q; i++) {
+        m_rot[i].fill(0);
+        for (q_t j = 0; j < q; j++) {
+          for (q_t k = 0; k < q; k++) {
+            m_rot[i][j] += (*this)[j][i] * m[j][k];
+          }
         }
       }
-    }
 
-    return m2_rot;
+      return m_rot;
+    }
   }
-}
+
+};
+
 
 template <q_t q>
-orthogonal_t <q, double> generate_rotation_uniform (gsl_rng *r, vector_t <q, double> v) {
+orthogonal_t <q, double> generate_rotation_uniform (gsl_rng *r, const vector_t <q, double>& v) {
   orthogonal_t <q, double> ptr;
   ptr.is_reflection = true;
-  ptr.x = (double *)calloc(q, sizeof(double));
 
   double v2 = 0;
 
   for (q_t i = 0; i < q; i++) {
-    ptr.x[i] = gsl_ran_ugaussian(r);
-    v2 += ptr.x[i] * ptr.x[i];
+    ptr[0][i] = gsl_ran_ugaussian(r);
+    v2 += ptr[0][i] * ptr[0][i];
   }
 
   double mag_v = sqrt(v2);
 
   for (q_t i = 0; i < q; i++) {
-    ptr.x[i] /= mag_v;
+    ptr[0][i] /= mag_v;
   }
 
   return ptr;
 }
 
 template <q_t q>
-orthogonal_t <q, double> generate_rotation_perturbation (gsl_rng *r, vector_t <q, double> v0, double epsilon, unsigned int n) {
+orthogonal_t <q, double> generate_rotation_perturbation (gsl_rng *r, const vector_t <q, double>& v0, double epsilon, unsigned int n) {
   orthogonal_t <q, double> m;
   m.is_reflection = true;
-  m.x = (double *)malloc(q * sizeof(double));
 
   vector_t <q, double> v;
 
@@ -191,22 +161,22 @@ orthogonal_t <q, double> generate_rotation_perturbation (gsl_rng *r, vector_t <q
   double m_dot_v = 0;
 
   for (q_t i = 0; i < q; i++) {
-    m.x[i] = gsl_ran_ugaussian(r);
-    m_dot_v += m.x[i] * v[i];
+    m[0][i] = gsl_ran_ugaussian(r);
+    m_dot_v += m[0][i] * v[i];
   }
 
   double v2 = 0;
   double factor = epsilon * gsl_ran_ugaussian(r);
 
   for (q_t i = 0; i < q; i++) {
-    m.x[i] = m.x[i] - m_dot_v * v[i] + factor * v[i];
-    v2 += pow(m.x[i], 2);
+    m[0][i] = m[0][i] - m_dot_v * v[i] + factor * v[i];
+    v2 += pow(m[0][i], 2);
   }
 
   double mag_v = sqrt(v2);
 
   for (q_t i = 0; i < q; i++) {
-    m.x[i] /= mag_v;
+    m[0][i] /= mag_v;
   }
 
   return m;